Cleaning
This commit is contained in:
parent
38a92d4a73
commit
d3f1253376
287
__init__.py
287
__init__.py
|
|
@ -0,0 +1,287 @@
|
|||
from flask import Flask, redirect, request, render_template, send_from_directory, session
|
||||
import json
|
||||
import os
|
||||
from os.path import join
|
||||
import sqlite3
|
||||
from . import db, config, scanner, calibration, archive
|
||||
|
||||
app = Flask(__name__)
|
||||
|
||||
# Manage secret key
|
||||
try:
|
||||
from . import secret
|
||||
app.config['SECRET_KEY'] = secret.SECRET_KEY
|
||||
except ImportError:
|
||||
# Secret key file does not exist, create it
|
||||
secret = os.urandom(50).hex()
|
||||
with open('secret.py', 'w') as f:
|
||||
f.write(f'SECRET_KEY = "{secret}"')
|
||||
app.config['SECRET_KEY'] = secret
|
||||
|
||||
|
||||
def get_calibration(conn: sqlite3.Connection) -> db.Calibration:
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
if calibration_id is None:
|
||||
return db.Calibration.Dummy
|
||||
|
||||
return db.Calibration.get_from_id(calibration_id, conn)
|
||||
|
||||
|
||||
@app.context_processor
|
||||
def inject_stage_and_region():
|
||||
conn = db.get()
|
||||
return dict(calibration=get_calibration(conn), leds=config.LEDS_UUIDS, CalibrationState=db.CalibrationState)
|
||||
|
||||
|
||||
@app.before_request
|
||||
def manage_auto_use_last_calibration():
|
||||
if config.AUTO_USE_LAST_CALIBRATION and 'calibration_id' not in session:
|
||||
conn = db.get()
|
||||
last = db.Calibration.get_last(conn)
|
||||
if last is not None:
|
||||
session['calibration_id'] = last.id
|
||||
|
||||
|
||||
@app.route("/")
|
||||
def index():
|
||||
conn = db.get()
|
||||
projects = db.Object.all_by_project(conn)
|
||||
return render_template('index.html', projects=projects)
|
||||
|
||||
|
||||
@app.route("/create-object/", methods=["POST"])
|
||||
def create_object():
|
||||
conn = db.get()
|
||||
with conn:
|
||||
db.Object.create(request.form.get('name'), request.form.get('project'), conn)
|
||||
return redirect('/')
|
||||
|
||||
|
||||
@app.route('/object/<id>')
|
||||
def object(id: int):
|
||||
conn = db.get()
|
||||
object = db.Object.get_from_id(id, conn).full(conn)
|
||||
return render_template('object.html', object=object)
|
||||
|
||||
|
||||
@app.route('/delete-object/<id>')
|
||||
def delete_object(id: int):
|
||||
conn = db.get()
|
||||
with conn:
|
||||
db.Object.delete_from_id(id, conn)
|
||||
return redirect('/')
|
||||
|
||||
|
||||
@app.route('/scan/<id>')
|
||||
def scan(id: int):
|
||||
conn = db.get()
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
object = db.Object.get_from_id(id, conn)
|
||||
|
||||
if calibration_id is None:
|
||||
raise RuntimeError("Impossible de faire l'acquisition sans étalonnage")
|
||||
|
||||
return render_template('scan.html', object=object, calibrated=True)
|
||||
|
||||
|
||||
@app.route('/scan-acquisition/<id>')
|
||||
def scan_existing(id: int):
|
||||
conn = db.get()
|
||||
calibrated = session.get('calibration_id', None) is not None
|
||||
acquisition = db.Acquisition.get_from_id(id, conn)
|
||||
object = acquisition.object(conn)
|
||||
return render_template('scan.html', object=object, acquisition=acquisition, calibrated=calibrated)
|
||||
|
||||
|
||||
@app.route("/calibrate/")
|
||||
def calibrate():
|
||||
conn = db.get()
|
||||
if 'calibration_id' not in session:
|
||||
with conn:
|
||||
calibration = db.Calibration.create(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
else:
|
||||
calibration = db.Calibration.get_from_id(session['calibration_id'], conn)
|
||||
|
||||
if calibration.state in [db.CalibrationState.Empty, db.CalibrationState.HasData]:
|
||||
return render_template('calibrate.html')
|
||||
else:
|
||||
return render_template('calibration.html', calibration=calibration)
|
||||
|
||||
|
||||
@app.route("/new-calibration")
|
||||
def new_calibration():
|
||||
conn = db.get()
|
||||
with conn:
|
||||
calibration = db.Calibration.create(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
|
||||
return redirect('/calibrate')
|
||||
|
||||
|
||||
@app.route("/cancel-calibration")
|
||||
def cancel_calibration():
|
||||
conn = db.get()
|
||||
calibration = db.Calibration.get_from_id(session['calibration_id'], conn)
|
||||
calibration.state = db.CalibrationState.HasData
|
||||
with conn:
|
||||
calibration.save(conn)
|
||||
return redirect('/calibrate')
|
||||
|
||||
|
||||
@app.route("/api/scan-for-calibration")
|
||||
def scan_calibration():
|
||||
conn = db.get()
|
||||
|
||||
if 'calibration_id' not in session:
|
||||
with conn:
|
||||
calibration = db.Calibration.create(conn)
|
||||
calibration_id = str(calibration.id)
|
||||
session['calibration_id'] = calibration.id
|
||||
else:
|
||||
calibration_id = str(session['calibration_id'])
|
||||
calibration = get_calibration(conn)
|
||||
|
||||
def generate():
|
||||
length = len(config.LEDS_UUIDS)
|
||||
for index, led_uuid in enumerate(scanner.scan(join(config.CALIBRATION_DIR, calibration_id))):
|
||||
yield f"{led_uuid},{(index+1)/length}\n"
|
||||
|
||||
with conn:
|
||||
calibration.state = db.CalibrationState.HasData
|
||||
calibration.save(conn)
|
||||
|
||||
return app.response_class(generate(), mimetype='text/plain')
|
||||
|
||||
|
||||
@app.route("/api/scan-for-object/<object_id>")
|
||||
def scan_object(object_id: int):
|
||||
conn = db.get()
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
|
||||
if calibration_id is None:
|
||||
raise RuntimeError("Impossible de faire l'acquisition sans étalonnage")
|
||||
|
||||
object = db.Object.get_from_id(object_id, conn)
|
||||
|
||||
if object is None:
|
||||
raise RuntimeError(f"Aucun objet d'id {object_id}")
|
||||
|
||||
with conn:
|
||||
acquisition = object.add_acquisition(calibration_id, conn)
|
||||
|
||||
def generate():
|
||||
yield str(acquisition.id)
|
||||
length = len(config.LEDS_UUIDS)
|
||||
for index, led_uuid in enumerate(scanner.scan(join(config.OBJECT_DIR, str(object.id), str(acquisition.id)))):
|
||||
yield f"{led_uuid},{(index+1)/length}\n"
|
||||
|
||||
return app.response_class(generate(), mimetype='text/plain')
|
||||
|
||||
|
||||
@app.route("/api/scan-for-acquisition/<acquisition_id>")
|
||||
def scan_acquisition(acquisition_id: int):
|
||||
conn = db.get()
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
|
||||
if calibration_id is None:
|
||||
raise RuntimeError("Impossible de faire l'acquisition sans étalonnage")
|
||||
|
||||
acquisition = db.Acquisition.get_from_id(acquisition_id, conn)
|
||||
|
||||
if acquisition is None:
|
||||
raise RuntimeError(f"Aucun acquisition d'id {acquisition_id}")
|
||||
|
||||
object = acquisition.object(conn)
|
||||
|
||||
def generate():
|
||||
length = len(config.LEDS_UUIDS)
|
||||
for index, led_uuid in enumerate(scanner.scan(join(config.OBJECT_DIR, str(object.id), str(acquisition.id)))):
|
||||
yield f"{led_uuid},{(index+1)/length}\n"
|
||||
|
||||
return app.response_class(generate(), mimetype='text/plain')
|
||||
|
||||
|
||||
@app.route("/validate-acquisition/<acquisition_id>")
|
||||
def validate_acquisition(acquisition_id: int):
|
||||
conn = db.get()
|
||||
acquisition = db.Acquisition.get_from_id(acquisition_id, conn)
|
||||
|
||||
if acquisition is None:
|
||||
raise f"Aucune acquisition d'id {acquisition_id}"
|
||||
|
||||
object = acquisition.object(conn)
|
||||
|
||||
acquisition.validated = True
|
||||
with conn:
|
||||
acquisition.save(conn)
|
||||
|
||||
return redirect(f'/object/{object.id}')
|
||||
|
||||
|
||||
@app.route("/delete-acquisition/<acquisition_id>")
|
||||
def delete_acquisition(acquisition_id: int):
|
||||
conn = db.get()
|
||||
with conn:
|
||||
acqusition = db.Acquisition.delete_from_id(acquisition_id, conn)
|
||||
return redirect('/object/' + str(acqusition.object_id))
|
||||
|
||||
|
||||
@app.route('/use-last-calibration')
|
||||
def use_last_calibration():
|
||||
conn = db.get()
|
||||
calibration = db.Calibration.get_last(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
return redirect('/calibrate')
|
||||
|
||||
|
||||
@app.route('/api/use-last-calibration')
|
||||
def api_use_last_calibration():
|
||||
conn = db.get()
|
||||
calibration = db.Calibration.get_last(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
return 'ok'
|
||||
|
||||
|
||||
@app.route("/api/calibrate")
|
||||
def run_calibration():
|
||||
conn = db.get()
|
||||
id = session['calibration_id']
|
||||
calib = db.Calibration.get_from_id(id, conn)
|
||||
if calib is None:
|
||||
return 'oops', 404
|
||||
|
||||
calibration_json = calibration.calibrate(join(config.CALIBRATION_DIR, str(id)))
|
||||
with open(join(config.CALIBRATION_DIR, str(id), 'calibration.json'), 'w') as f:
|
||||
json.dump(calibration_json, f, indent=4)
|
||||
with conn:
|
||||
calib.state = db.CalibrationState.IsComputed
|
||||
calib.save(conn)
|
||||
|
||||
return 'ok'
|
||||
|
||||
|
||||
@app.route('/validate-calibration')
|
||||
def validate_calibration():
|
||||
conn = db.get()
|
||||
calib = get_calibration(conn)
|
||||
if calib is None:
|
||||
return 'oops', 404
|
||||
|
||||
with conn:
|
||||
calib.validate(conn)
|
||||
|
||||
return redirect('/')
|
||||
|
||||
|
||||
@app.route('/static/<path:path>')
|
||||
def send_static(path):
|
||||
return send_from_directory('static', path)
|
||||
|
||||
|
||||
@app.route('/data/<path:path>')
|
||||
def send_data(path):
|
||||
return send_from_directory('data', path)
|
||||
|
||||
|
||||
app.register_blueprint(archive.bp)
|
||||
335
app.py
335
app.py
|
|
@ -1,335 +0,0 @@
|
|||
#!/usr/bin/env python
|
||||
|
||||
from flask import Flask, redirect, request, render_template, send_from_directory, session
|
||||
import itertools
|
||||
import json
|
||||
import os
|
||||
from os.path import join
|
||||
import sqlite3
|
||||
from . import db, config, scanner, calibration, archive
|
||||
|
||||
app = Flask(__name__)
|
||||
|
||||
# Manage secret key
|
||||
try:
|
||||
from . import secret
|
||||
app.config['SECRET_KEY'] = secret.SECRET_KEY
|
||||
except ImportError:
|
||||
# Secret key file does not exist, create it
|
||||
secret = os.urandom(50).hex()
|
||||
with open('secret.py', 'w') as f:
|
||||
f.write(f'SECRET_KEY = "{secret}"')
|
||||
app.config['SECRET_KEY'] = secret
|
||||
|
||||
|
||||
def get_calibration(conn: sqlite3.Connection) -> db.Calibration:
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
if calibration_id is None:
|
||||
return db.Calibration.Dummy
|
||||
|
||||
return db.Calibration.get_from_id(calibration_id, conn)
|
||||
|
||||
|
||||
@app.context_processor
|
||||
def inject_stage_and_region():
|
||||
conn = db.get()
|
||||
return dict(calibration=get_calibration(conn), leds=config.LEDS_UUIDS, CalibrationState=db.CalibrationState)
|
||||
|
||||
|
||||
@app.before_request
|
||||
def manage_auto_use_last_calibration():
|
||||
if config.AUTO_USE_LAST_CALIBRATION and 'calibration_id' not in session:
|
||||
conn = db.get()
|
||||
last = db.Calibration.get_last(conn)
|
||||
if last is not None:
|
||||
session['calibration_id'] = last.id
|
||||
|
||||
|
||||
@app.route("/")
|
||||
def index():
|
||||
conn = db.get()
|
||||
projects = db.Object.all_by_project(conn)
|
||||
return render_template('index.html', projects=projects)
|
||||
|
||||
|
||||
@app.route("/create-object/", methods=["POST"])
|
||||
def create_object():
|
||||
conn = db.get()
|
||||
with conn:
|
||||
db.Object.create(request.form.get('name'), request.form.get('project'), conn)
|
||||
return redirect('/')
|
||||
|
||||
|
||||
@app.route('/object/<id>')
|
||||
def object(id: int):
|
||||
conn = db.get()
|
||||
object = db.Object.get_from_id(id, conn).full(conn)
|
||||
return render_template('object.html', object=object)
|
||||
|
||||
|
||||
@app.route('/delete-object/<id>')
|
||||
def delete_object(id: int):
|
||||
conn = db.get()
|
||||
with conn:
|
||||
db.Object.delete_from_id(id, conn)
|
||||
return redirect('/')
|
||||
|
||||
|
||||
@app.route('/scan/<id>')
|
||||
def scan(id: int):
|
||||
conn = db.get()
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
object = db.Object.get_from_id(id, conn)
|
||||
|
||||
if calibration_id is None:
|
||||
raise RuntimeError("Impossible de faire l'acquisition sans étalonnage")
|
||||
|
||||
return render_template('scan.html', object=object, calibrated=True)
|
||||
|
||||
|
||||
@app.route('/scan-acquisition/<id>')
|
||||
def scan_existing(id: int):
|
||||
conn = db.get()
|
||||
calibrated = session.get('calibration_id', None) is not None
|
||||
acquisition = db.Acquisition.get_from_id(id, conn)
|
||||
object = acquisition.object(conn)
|
||||
return render_template('scan.html', object=object, acquisition=acquisition, calibrated=calibrated)
|
||||
|
||||
|
||||
@app.route("/calibrate/")
|
||||
def calibrate():
|
||||
conn = db.get()
|
||||
if 'calibration_id' not in session:
|
||||
with conn:
|
||||
calibration = db.Calibration.create(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
else:
|
||||
calibration = db.Calibration.get_from_id(session['calibration_id'], conn)
|
||||
|
||||
if calibration.state in [db.CalibrationState.Empty, db.CalibrationState.HasData]:
|
||||
return render_template('calibrate.html')
|
||||
else:
|
||||
return render_template('calibration.html', calibration=calibration)
|
||||
|
||||
|
||||
@app.route("/new-calibration")
|
||||
def new_calibration():
|
||||
conn = db.get()
|
||||
with conn:
|
||||
calibration = db.Calibration.create(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
|
||||
return redirect('/calibrate')
|
||||
|
||||
|
||||
@app.route("/cancel-calibration")
|
||||
def cancel_calibration():
|
||||
conn = db.get()
|
||||
calibration = db.Calibration.get_from_id(session['calibration_id'], conn)
|
||||
calibration.state = db.CalibrationState.HasData
|
||||
with conn:
|
||||
calibration.save(conn)
|
||||
return redirect('/calibrate')
|
||||
|
||||
|
||||
@app.route("/api/scan-for-calibration")
|
||||
def scan_calibration():
|
||||
conn = db.get()
|
||||
|
||||
if 'calibration_id' not in session:
|
||||
with conn:
|
||||
calibration = db.Calibration.create(conn)
|
||||
calibration_id = str(calibration.id)
|
||||
session['calibration_id'] = calibration.id
|
||||
else:
|
||||
calibration_id = str(session['calibration_id'])
|
||||
calibration = get_calibration(conn)
|
||||
|
||||
def generate():
|
||||
length = len(config.LEDS_UUIDS)
|
||||
for index, led_uuid in enumerate(scanner.scan(join(config.CALIBRATION_DIR, calibration_id))):
|
||||
yield f"{led_uuid},{(index+1)/length}\n"
|
||||
|
||||
with conn:
|
||||
calibration.state = db.CalibrationState.HasData
|
||||
calibration.save(conn)
|
||||
|
||||
return app.response_class(generate(), mimetype='text/plain')
|
||||
|
||||
|
||||
@app.route("/api/scan-for-object/<object_id>")
|
||||
def scan_object(object_id: int):
|
||||
conn = db.get()
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
|
||||
if calibration_id is None:
|
||||
raise RuntimeError("Impossible de faire l'acquisition sans étalonnage")
|
||||
|
||||
object = db.Object.get_from_id(object_id, conn)
|
||||
|
||||
if object is None:
|
||||
raise RuntimeError(f"Aucun objet d'id {object_id}")
|
||||
|
||||
with conn:
|
||||
acquisition = object.add_acquisition(calibration_id, conn)
|
||||
|
||||
def generate():
|
||||
yield str(acquisition.id)
|
||||
length = len(config.LEDS_UUIDS)
|
||||
for index, led_uuid in enumerate(scanner.scan(join(config.OBJECT_DIR, str(object.id), str(acquisition.id)))):
|
||||
yield f"{led_uuid},{(index+1)/length}\n"
|
||||
|
||||
return app.response_class(generate(), mimetype='text/plain')
|
||||
|
||||
|
||||
@app.route("/api/scan-for-acquisition/<acquisition_id>")
|
||||
def scan_acquisition(acquisition_id: int):
|
||||
conn = db.get()
|
||||
calibration_id = session.get('calibration_id', None)
|
||||
|
||||
if calibration_id is None:
|
||||
raise RuntimeError("Impossible de faire l'acquisition sans étalonnage")
|
||||
|
||||
acquisition = db.Acquisition.get_from_id(acquisition_id, conn)
|
||||
|
||||
if acquisition is None:
|
||||
raise RuntimeError(f"Aucun acquisition d'id {acquisition_id}")
|
||||
|
||||
object = acquisition.object(conn)
|
||||
|
||||
def generate():
|
||||
length = len(config.LEDS_UUIDS)
|
||||
for index, led_uuid in enumerate(scanner.scan(join(config.OBJECT_DIR, str(object.id), str(acquisition.id)))):
|
||||
yield f"{led_uuid},{(index+1)/length}\n"
|
||||
|
||||
return app.response_class(generate(), mimetype='text/plain')
|
||||
|
||||
|
||||
@app.route("/validate-acquisition/<acquisition_id>")
|
||||
def validate_acquisition(acquisition_id: int):
|
||||
conn = db.get()
|
||||
acquisition = db.Acquisition.get_from_id(acquisition_id, conn)
|
||||
|
||||
if acquisition is None:
|
||||
raise f"Aucune acquisition d'id {acquisition_id}"
|
||||
|
||||
object = acquisition.object(conn)
|
||||
|
||||
acquisition.validated = True
|
||||
with conn:
|
||||
acquisition.save(conn)
|
||||
|
||||
return redirect(f'/object/{object.id}')
|
||||
|
||||
|
||||
@app.route("/delete-acquisition/<acquisition_id>")
|
||||
def delete_acquisition(acquisition_id: int):
|
||||
conn = db.get()
|
||||
with conn:
|
||||
acqusition = db.Acquisition.delete_from_id(acquisition_id, conn)
|
||||
return redirect('/object/' + str(acqusition.object_id))
|
||||
|
||||
|
||||
@app.route('/use-last-calibration')
|
||||
def use_last_calibration():
|
||||
conn = db.get()
|
||||
calibration = db.Calibration.get_last(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
return redirect('/calibrate')
|
||||
|
||||
|
||||
@app.route('/api/use-last-calibration')
|
||||
def api_use_last_calibration():
|
||||
conn = db.get()
|
||||
calibration = db.Calibration.get_last(conn)
|
||||
session['calibration_id'] = calibration.id
|
||||
return 'ok'
|
||||
|
||||
|
||||
@app.route("/api/calibrate")
|
||||
def run_calibration():
|
||||
conn = db.get()
|
||||
id = session['calibration_id']
|
||||
calib = db.Calibration.get_from_id(id, conn)
|
||||
if calib is None:
|
||||
return 'oops', 404
|
||||
|
||||
calibration_json = calibration.calibrate(join(config.CALIBRATION_DIR, str(id)))
|
||||
with open(join(config.CALIBRATION_DIR, str(id), 'calibration.json'), 'w') as f:
|
||||
json.dump(calibration_json, f, indent=4)
|
||||
with conn:
|
||||
calib.state = db.CalibrationState.IsComputed
|
||||
calib.save(conn)
|
||||
|
||||
return 'ok'
|
||||
|
||||
|
||||
@app.route('/validate-calibration')
|
||||
def validate_calibration():
|
||||
conn = db.get()
|
||||
calib = get_calibration(conn)
|
||||
if calib is None:
|
||||
return 'oops', 404
|
||||
|
||||
with conn:
|
||||
calib.validate(conn)
|
||||
|
||||
return redirect('/')
|
||||
|
||||
|
||||
def download_object(id: int, tar: archive.ArchiveSender):
|
||||
conn = db.get()
|
||||
object = db.Object.get_from_id(id, conn).full(conn)
|
||||
|
||||
# Group acquisitions sharing calibration
|
||||
def keyfunc(x: db.Calibration) -> int:
|
||||
return x.calibration_id
|
||||
|
||||
acquisitions_sorted = sorted(object.acquisitions, key=keyfunc)
|
||||
acquisitions_grouped = [
|
||||
(db.Calibration.get_from_id(k, conn), list(g))
|
||||
for k, g in itertools.groupby(acquisitions_sorted, key=keyfunc)
|
||||
]
|
||||
|
||||
# Create archive file to send
|
||||
for calibration_index, (calib, acquisitions) in enumerate(acquisitions_grouped):
|
||||
calibration_dir = join(config.CALIBRATION_DIR, str(calib.id))
|
||||
|
||||
# Add calibration images
|
||||
for image in os.listdir(calibration_dir):
|
||||
tar.add_file(
|
||||
f'object/{calibration_index}/calibration/{image}',
|
||||
join(calibration_dir, image)
|
||||
)
|
||||
|
||||
# Add each acquisition
|
||||
for acquisition_index, acquisition in enumerate(acquisitions):
|
||||
acquisition_dir = join(config.OBJECT_DIR, str(object.id), str(acquisition.id))
|
||||
|
||||
for image in os.listdir(acquisition_dir):
|
||||
tar.add_file(
|
||||
f'object/{calibration_index}/{acquisition_index}/{image}',
|
||||
join(acquisition_dir, image)
|
||||
)
|
||||
|
||||
return tar.response()
|
||||
|
||||
|
||||
@app.route('/download-object/tar/<id>')
|
||||
def download_object_tar(id: int):
|
||||
return download_object(id, archive.TarSender())
|
||||
|
||||
|
||||
@app.route('/download-object/zip/<id>')
|
||||
def download_object_zip(id: int):
|
||||
return download_object(id, archive.ZipSender())
|
||||
|
||||
|
||||
@app.route('/static/<path:path>')
|
||||
def send_static(path):
|
||||
return send_from_directory('static', path)
|
||||
|
||||
|
||||
@app.route('/data/<path:path>')
|
||||
def send_data(path):
|
||||
return send_from_directory('data', path)
|
||||
152
archive.py
152
archive.py
|
|
@ -1,11 +1,14 @@
|
|||
import builtins
|
||||
from datetime import datetime
|
||||
from flask import Response
|
||||
from flask import Response, Blueprint
|
||||
import functools
|
||||
import itertools
|
||||
import os
|
||||
from os.path import join
|
||||
import zlib
|
||||
from typing import Optional
|
||||
import time
|
||||
from . import db, config
|
||||
|
||||
# Chunks for crc 32 computation
|
||||
CRC32_CHUNK_SIZE = 65_536
|
||||
|
|
@ -21,6 +24,13 @@ ZERO = ord('0')
|
|||
|
||||
|
||||
def tar_header_chunk(filename: str, filepath: str) -> bytes:
|
||||
"""
|
||||
Returns the 512 bytes header for a tar file in a tar archive.
|
||||
|
||||
Args:
|
||||
filename (str): path of where the file will be in the archive.
|
||||
filepath (str): path of where the file is currently on the disk.
|
||||
"""
|
||||
|
||||
# Returns the octal representation without the initial
|
||||
def oct(i: int) -> str:
|
||||
|
|
@ -67,25 +77,58 @@ def tar_header_chunk(filename: str, filepath: str) -> bytes:
|
|||
|
||||
|
||||
class ArchiveSender:
|
||||
"""
|
||||
Helper class to send archives over the network.
|
||||
|
||||
This class is abstract, and needs to be derived by specific archive sender classes.
|
||||
"""
|
||||
|
||||
def __init__(self):
|
||||
"""
|
||||
Creates a new archive sender.
|
||||
"""
|
||||
self.files: dict[str, str] = {}
|
||||
|
||||
def add_file(self, filename: str, filepath: str):
|
||||
"""
|
||||
Adds a file to the archive.
|
||||
|
||||
Args:
|
||||
filename (str): path of where the file will be in the archive.
|
||||
filepath (str): path of where the file is currently on the disk.
|
||||
"""
|
||||
self.files[filename] = filepath
|
||||
|
||||
def content_length(self) -> Optional[int]:
|
||||
"""
|
||||
Returns the size of the archive if it is computable beforehand, none otherwise.
|
||||
"""
|
||||
return None
|
||||
|
||||
def generator(self):
|
||||
"""
|
||||
Returns a generator that yields the bytes of the archive.
|
||||
"""
|
||||
raise NotImplementedError("Abstract method")
|
||||
|
||||
def mime_type(self) -> str:
|
||||
"""
|
||||
Returns the mime type of the archive.
|
||||
"""
|
||||
raise NotImplementedError("Abstract method")
|
||||
|
||||
def archive_name(self) -> str:
|
||||
"""
|
||||
Returns the name of the archive.
|
||||
|
||||
This method is useful for web applications where the archive will be downloaded.
|
||||
"""
|
||||
raise NotImplementedError("Abstract method")
|
||||
|
||||
def response(self):
|
||||
def response(self) -> Response:
|
||||
"""
|
||||
Returns a flask reponse for the archive.
|
||||
"""
|
||||
headers = {'Content-Disposition': f'attachment; filename="{self.archive_name()}"'}
|
||||
|
||||
length = self.content_length()
|
||||
|
|
@ -100,6 +143,10 @@ class ArchiveSender:
|
|||
|
||||
|
||||
class TarSender(ArchiveSender):
|
||||
"""
|
||||
A sender for tar archives computed on the fly.
|
||||
"""
|
||||
|
||||
def generator(self):
|
||||
def generate():
|
||||
for name, file in self.files.items():
|
||||
|
|
@ -141,6 +188,12 @@ class TarSender(ArchiveSender):
|
|||
|
||||
|
||||
def crc32(filename) -> int:
|
||||
"""
|
||||
Computes the CRC32 checksum for the file.
|
||||
|
||||
Args:
|
||||
filename (str): path to the file of which the CRC32 needs to be computed.
|
||||
"""
|
||||
with open(filename, 'rb') as fh:
|
||||
hash = 0
|
||||
while True:
|
||||
|
|
@ -152,6 +205,17 @@ def crc32(filename) -> int:
|
|||
|
||||
|
||||
def zip_local_file_header(filename: str, filepath: str, crc: int) -> bytes:
|
||||
"""
|
||||
Generates the bytes for the local file header of the file.
|
||||
|
||||
Args:
|
||||
filename (str): path of where the file will be in the archive.
|
||||
filepath (str): path of where the file is currently on the disk.
|
||||
crc (int):
|
||||
the CRC 32 checksum of the file. It is not computed by this function because it is also required in the
|
||||
central directory file header, so the user of this function should compute it beforehand, and reuse it later
|
||||
to avoid computing it twice.
|
||||
"""
|
||||
buffer_size = 30 + len(filename)
|
||||
buffer = bytearray(buffer_size)
|
||||
stat = os.stat(filepath)
|
||||
|
|
@ -192,6 +256,18 @@ def zip_local_file_header(filename: str, filepath: str, crc: int) -> bytes:
|
|||
|
||||
|
||||
def zip_central_directory_file_header(filename: str, filepath: str, crc: int, offset: int) -> bytes:
|
||||
"""
|
||||
Generates the bytes for the central directory file header of the file.
|
||||
|
||||
Args:
|
||||
filename (str): path of where the file will be in the archive.
|
||||
filepath (str): path of where the file is currently on the disk.
|
||||
crc (int):
|
||||
the CRC 32 checksum of the file. It is not computed by this function because it is also required in the
|
||||
local file header, so the user of this function should compute it beforehand, and reuse it later to avoid
|
||||
computing it twice.
|
||||
offset (int): number of bytes where the file starts.
|
||||
"""
|
||||
buffer_size = 46 + len(filename)
|
||||
buffer = bytearray(buffer_size)
|
||||
stat = os.stat(filepath)
|
||||
|
|
@ -246,6 +322,14 @@ def zip_central_directory_file_header(filename: str, filepath: str, crc: int, of
|
|||
|
||||
|
||||
def zip_end_of_central_directory(items_number: int, central_directory_size: int, central_directory_offset: int):
|
||||
"""
|
||||
Generates the bytes for the end of central directory of the archive.
|
||||
|
||||
Args:
|
||||
items_number (int): number of files in the archive.
|
||||
central_directory_size (int): size in bytes of the central directory.
|
||||
central_directory_offset (int): number of the byte where the central directory starts.
|
||||
"""
|
||||
buffer = bytearray(22)
|
||||
# Field 1: End of central directory signature = 0x06054b50 (buffer[0:4])
|
||||
buffer[0:4] = b'\x50\x4b\x05\x06'
|
||||
|
|
@ -273,6 +357,10 @@ def zip_end_of_central_directory(items_number: int, central_directory_size: int,
|
|||
|
||||
|
||||
class ZipSender(ArchiveSender):
|
||||
"""
|
||||
A sender for zip archives computed on the fly.
|
||||
"""
|
||||
|
||||
def generator(self):
|
||||
def generate():
|
||||
local_offsets = dict()
|
||||
|
|
@ -329,3 +417,63 @@ class ZipSender(ArchiveSender):
|
|||
|
||||
def archive_name(self) -> str:
|
||||
return 'archive.zip'
|
||||
|
||||
|
||||
def download_object(id: int, archive: ArchiveSender):
|
||||
"""
|
||||
Helper for routes that send archives.
|
||||
"""
|
||||
conn = db.get()
|
||||
object = db.Object.get_from_id(id, conn).full(conn)
|
||||
|
||||
# Group acquisitions sharing calibration
|
||||
def keyfunc(x: db.Calibration) -> int:
|
||||
return x.calibration_id
|
||||
|
||||
acquisitions_sorted = sorted(object.acquisitions, key=keyfunc)
|
||||
acquisitions_grouped = [
|
||||
(db.Calibration.get_from_id(k, conn), list(g))
|
||||
for k, g in itertools.groupby(acquisitions_sorted, key=keyfunc)
|
||||
]
|
||||
|
||||
# Create archive file to send
|
||||
for calibration_index, (calib, acquisitions) in enumerate(acquisitions_grouped):
|
||||
calibration_dir = join(config.CALIBRATION_DIR, str(calib.id))
|
||||
|
||||
# Add calibration images
|
||||
for image in os.listdir(calibration_dir):
|
||||
archive.add_file(
|
||||
f'object/{calibration_index}/calibration/{image}',
|
||||
join(calibration_dir, image)
|
||||
)
|
||||
|
||||
# Add each acquisition
|
||||
for acquisition_index, acquisition in enumerate(acquisitions):
|
||||
acquisition_dir = join(config.OBJECT_DIR, str(object.id), str(acquisition.id))
|
||||
|
||||
for image in os.listdir(acquisition_dir):
|
||||
archive.add_file(
|
||||
f'object/{calibration_index}/{acquisition_index}/{image}',
|
||||
join(acquisition_dir, image)
|
||||
)
|
||||
|
||||
return archive.response()
|
||||
|
||||
|
||||
blueprint = Blueprint('archive', __name__)
|
||||
|
||||
|
||||
@blueprint.route('/download-object/tar/<id>')
|
||||
def download_object_tar(id: int):
|
||||
"""
|
||||
Downloads an object as a tar archive.
|
||||
"""
|
||||
return download_object(id, TarSender())
|
||||
|
||||
|
||||
@blueprint.route('/download-object/zip/<id>')
|
||||
def download_object_zip(id: int):
|
||||
"""
|
||||
Downloads an object as a zip archive.
|
||||
"""
|
||||
return download_object(id, ZipSender())
|
||||
|
|
|
|||
Loading…
Reference in New Issue